rs46019371 SNP Detail

Summary

• ID
  rs46019371
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112453454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAGGGAG GTAGTTTCTA
  AGGGAGGCAC TTGTCAGTGT TGTCAAGATC TCCACTTTAC AGATAAGGAA ACTAAGCCCG
  GTGAGGGTGA CTGGCCCACA ATTCCACGCA GCTGGTTAGC ACAAGCCTGG CATATACCCA
  AGGTATCTGA CTCCAAAGTC ATCAAGCCAA CCGCACCCTG CCATGCAAAT GAGTAGGGGA
  R
  CCTGCTTCAA AACATGGACG AGTTAGAAAG CAGTCACTCG CTGTACAAAA CAATGTTATT
  GTAAATAAGC CATCCCCAGC TACGAGCTTG CGTTGGACTG GCTAGCTGGG TAAAAATCAT
  TAATGGTTTC TCAGAAATAC TGGGACAGAG AAACCAAACC CAAACTTTAG GACTCGTGGC
  AGCTAAAGTT CAAAGAACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52696797	NES15533134	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46019371					SNP	G	G	G	G	G	G	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696797	NES15533134	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112453454 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	within coordinates
Rr486335	regulatory region 486335	within coordinates
Tssr121103	transcription start site region 121103	1469 bp upstream
Tssr121104	transcription start site region 121104	1496 bp upstream
Tssr121105	transcription start site region 121105	1527 bp upstream