rs46019579 SNP Detail

Summary

• ID
  rs46019579
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40643956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAACAGCT CATATGCTAG
  CTTTACAGAC TCAGACTTAA AGCCCCCCTG CTTTAAACCC CCATTGGCTC CTCTTGGCCT
  GTGTACCAAG AATGACCTAA TCCCCTCAGT ATGTTATTGC AAAAGAAAAA AAAAACTATT
  CATAATACTT GCTGGAGGTG GAAAGGAGAA GTCTTTCTAA AGGAAGTATA AAAAATTTTT
  T
  AAAATAATAA TAACTTTCCT TTTACCCCTC CATGTTCTTA GCCAGGTCCC TATAACAAAA
  GACAGATGAT CAAGAGAAAA GCATCTAAAT TTAATGTCTT CTCTGACATC AGAACATTGG
  CAAGGAAATG AAGGCTCAAA GAAATGATTC AACCTGAGTG TTTTTATAGT GGAAAGTTGT
  GGGGCGAGGG GAACGAACTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136336822	ENSMUSSNP339063	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46019579					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40643956 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21598	CpG island 21598	1555 bp distal
D9Mit253	DNA segment, Chr 9, Massachusetts Institute of Technology 253	1418 bp proximal
Gm68229	predicted gene, 68229	1058 bp upstream
Gm68234	predicted gene, 68234	991 bp downstream
Rr1916	regulatory region 1916	253 bp downstream
Rr676903	regulatory region 676903	1703 bp distal
Rr676904	regulatory region 676904	1069 bp distal
Rr676905	regulatory region 676905	690 bp distal
Rr676906	regulatory region 676906	within coordinates
Tssr84462	transcription start site region 84462	1682 bp downstream
Tssr84463	transcription start site region 84463	1646 bp downstream