rs46020049 SNP Detail

Summary

• ID
  rs46020049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:11338069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGTGAACAGA CACCATGGCC AAGGAAACTT ATAAGGAAAA
  CATTTAATTG GGGCTGGCTT ACAAGTTCAG AGATTCAGTC CATTATCATC AAGATGGGAA
  Y
  ATGGCAGCAT CCAGGCAGGC ATGGTACAGA AGGAGCTGAG AATTCTACAT CTTCATCTGA
  AGGATGCTAG TAGAATACTC ACTTCCAGGC AGCTAGGATG A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144554470	ENSMUSSNP1087958	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46020049					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:11338069 () rs orientation: forward

Symbol	Name	Function Class
Rr462890	regulatory region 462890	1448 bp distal
Smc6	structural maintenance of chromosomes 6	within coordinates
Tssr112797	transcription start site region 112797	1541 bp upstream