rs46020296 SNP Detail

Summary

• ID
  rs46020296
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119908441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTGAGA AGTGGAAAGG
  AACATCACTA ATTATCAGTC AACATCACTT ATATAAGTTG TGCTCTGAAT ATCACAATAG
  CTGAAAATTC CTTAACATTT AATAACTCGC AATCCTTCTT TGATTTTCTT TTTCTCAAGT
  TCTAAAACTT GTAAAATAAG CATATCATAA AAAAAGAAAT GAGAGTGTAG AAGTTAAGCT
  R
  TGAAGCATGT TCTGAATCAA ATATATAAAG GTAAAACTGA CACTCCTGGG GCAGAATTAG
  GGCTTCTGTT TCCTCACATT GGTTCTTGAA AATAAAAAAT GCGTCATGTA ATCCCAAAGG
  AGCTTACTGT GTATTTGTCT GCATGTGGGC AGAGGCAAAG ATGCCCTCAT ATTGTGGTCC
  CCTTTGTCTA TATTTCCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61734980	NES17669795	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs46020296					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61734980	NES17669795	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119908441 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5238	CpG island 5238	1160 bp proximal
Rr474318	regulatory region 474318	764 bp proximal
Tmem196	transmembrane protein 196	1116 bp upstream
Tssr115576	transcription start site region 115576	1398 bp upstream