rs46022172 SNP Detail

Summary

• ID
  rs46022172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52209758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTATAA GTGCAGCATA
  GTCTCTAGAG TATCATGTTT TTCATAGTTA GTGATTTATA TATTGCATAC ATACCAGAGT
  ATATGCATAC TCGTGGAAGT CAGAGGACAA CTTATGGAAT CAGTTTTCCT TTTCACCACA
  TAGATTTCCT GTATGAAACT GTCGTTTTTA AAGGCTCTTC TAAGTCCTTT ATCTCTTTGC
  Y
  GTGTGTCTAA ACTGTGTTTT TATTCTCTGG ACCTGCAGGA ACCCCAGTGT GAATGGCCAC
  TAACACTCTG CTTCACTTCT TTGGTCCCCA TATGTGATAT ATTCAGAAAG ATTGTGTTCT
  CTTCCCCTGA AGATCTTAAA AAGACAGTCA AGAAACTTGC TTATTCTGGT CAGAATTTTC
  CTGGTTCAAA GCCATGATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60261847	NES15764113	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46022172					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60261847	NES15764113	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52209758 () rs orientation: forward

Symbol	Name	Function Class
Gm20098	predicted gene, 20098	within coordinates
Rr335418	regulatory region 335418	243 bp proximal
Rr370289	regulatory region 370289	1349 bp upstream
Rr405357	regulatory region 405357	1065 bp upstream
Tssr145177	transcription start site region 145177	1475 bp upstream
Tssr148690	transcription start site region 148690	1190 bp downstream
Tssr148691	transcription start site region 148691	1220 bp downstream