rs46022424 SNP Detail

Summary

• ID
  rs46022424
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172152116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGGGTTT GTGCACCCTC
  CCCTCGGGGC AGATCATTTT GTTCCTACCT CAGAATCTTC CCCAACCGGA ATCCATCTCA
  GAAACAGAGG AGTAAGCATT CACTAATCAG AGACCGGCTC TGACATTGGA AGTCTGGCCC
  TGAGACATCT TGGGGTCATT GGTATTCTTT GGCAAAGCTG GAATAAGATG TATCAGGGAG
  S
  GTAGGGAAGG AGAGGCCACC GGGGCCTCTG CAGGGAGAAG GCCTGAGAAG CAGAGGTAGG
  GCTTGGGGGA GTAGGGATAG GTGCAAAGTG GAGGCAGAGG CAGAGGGGGA AGAGAAGGCA
  GATGAAAAAG TCCCTGATAG AAACCTGTCC GAGATTGTGT CAGAGAGAGG GACAGCGCAG
  AGACAGAGGG AGCAGTGCGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120012362	PARCsnp_1.08448	PARC_SEQ	INBRED	f	SNP		G	C
ss146187937	ENSMUSSNP5472736	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320124213	CHEV_1_174254680	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs46022424					SNP	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172152116 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	995 bp proximal
Gm36937	predicted gene, 36937	888 bp downstream
Gm70847	predicted gene, 70847	1731 bp upstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	within coordinates
Rr423525	regulatory region 423525	356 bp proximal
Rr423526	regulatory region 423526	546 bp proximal
Rr423527	regulatory region 423527	1241 bp proximal
Rr423528	regulatory region 423528	1348 bp proximal
Rr423529	regulatory region 423529	1763 bp proximal
Tssr15210	transcription start site region 15210	1669 bp downstream
Tssr15211	transcription start site region 15211	1679 bp downstream
Tssr15212	transcription start site region 15212	1699 bp downstream