rs46023153 SNP Detail

Summary

• ID
  rs46023153
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22181874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCCCGGTG GCCCCGGAAG GTCCCAGGTC AGAGGCGCTG
  CGGGGCTGGG AAACGGGAGG GAGCGGAGCA GCGGGGTGTT TTACGCAGCT GCTTTTATGG
  R
  TGCCGCTCTC ACAGTTCTGT TATCTTACCG TTGTCGGGAA ATTGAGATCC TGTGAACTGG
  GGGTCTATCA TGATTTTTTT TTTCATTTAT CCTCCAGTTA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60549030	NES16565545	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46023153					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60549030	NES16565545	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22181874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8665	CpG island 8665	within coordinates
Gm7805	predicted gene 7805	1243 bp downstream
Rr405064	regulatory region 405064	190 bp downstream
Rr523003	regulatory region 523003	453 bp distal
Rr523004	regulatory region 523004	324 bp distal
Rr523005	regulatory region 523005	within coordinates
Tssr142901	transcription start site region 142901	141 bp downstream
Tssr142902	transcription start site region 142902	696 bp upstream
Zfp942	zinc finger protein 942	429 bp upstream
Zfp943	zinc finger prtoein 943	within coordinates