rs46024658 SNP Detail

Summary

• ID
  rs46024658
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3309981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTTGAGA GATGTAATGG
  AAGGAAAGCG TGGTGTTAAT CTGCGTACTG CTTAAGACAG TATTTCCATA ATCAATGATG
  GTTTCATAGA GAAACTAAGT CCTATGAACC TGACCTCTTT TATGGCTAAT ACGACTAAGC
  AAGAATGGAG TACAGAATTA AGTGGCTACA GTACACACTT ATCAAAATAA ATGCAATTTT
  W
  AAACCTTTCA AGTGTGTGTC TTTATTGTTC AGCATGCTCA CATTGAAAAT AGAAGTGATT
  TTTTTAATGC CTTAAAAAAA AAAAAAACCA AAACCCTAAG TTGTAACTAA TGCATTAAGT
  GCTCTGCTCA AAACCGTCTT CGCATGAGGC GGGTATCTTT GCAGGCTGCA AGGCGCTGCT
  CTAGGTCTCG GATAGTGTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62609608	NES17307821	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46024658					SNP	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62609608	NES17307821	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3309981 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	within coordinates
Rr498566	regulatory region 498566	800 bp proximal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	1239 bp downstream
Tssr130397	transcription start site region 130397	1369 bp downstream
Tssr130398	transcription start site region 130398	1316 bp downstream
Tssr130399	transcription start site region 130399	1227 bp downstream
Tssr130400	transcription start site region 130400	1203 bp downstream
Tssr130401	transcription start site region 130401	1195 bp downstream
Tssr130402	transcription start site region 130402	1131 bp downstream
Tssr130403	transcription start site region 130403	1084 bp downstream
Tssr130404	transcription start site region 130404	1042 bp downstream
Tssr130405	transcription start site region 130405	1024 bp downstream
Tssr130406	transcription start site region 130406	998 bp downstream
Tssr130407	transcription start site region 130407	962 bp downstream
Tssr130408	transcription start site region 130408	932 bp downstream
Tssr130409	transcription start site region 130409	915 bp downstream
Tssr130410	transcription start site region 130410	889 bp downstream
Tssr130411	transcription start site region 130411	841 bp downstream
Tssr130412	transcription start site region 130412	760 bp downstream
Tssr130413	transcription start site region 130413	522 bp downstream
Tssr130414	transcription start site region 130414	468 bp downstream
Tssr130415	transcription start site region 130415	391 bp downstream
Tssr130416	transcription start site region 130416	101 bp downstream
Tssr133563	transcription start site region 133563	1262 bp upstream
Tssr133564	transcription start site region 133564	1231 bp upstream
Tssr133565	transcription start site region 133565	1187 bp upstream
Tssr133566	transcription start site region 133566	1175 bp upstream
Tssr133567	transcription start site region 133567	924 bp upstream
Tssr133568	transcription start site region 133568	797 bp upstream