rs46025506 SNP Detail

Summary

• ID
  rs46025506
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:52119824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATAGTTTA AGTGACTAAA
  AATTAGAAAA AGTTAACAAA ATTTCCCCTC AAAATAGTGA CTAGTTTGTG GGGGAAACAT
  GGTATGAAGT TTAATCCTTT TGCATGGTAG TACAATTTAA GGCTGTCAGC ATTTTAATGG
  AACATTCCAA ATTAAAACTG AATTATTGAT CAAACATTGA CTTTTGCTTA GAACCCATGC
  Y
  ATCAAAGACA AACATTTAAT ATATTTGAGA GATGAATGCA CCCAGAATCC TTAAACAAAT
  GAAAAGTCTT GGGTCTTAAT GAAATAAACC AAAGTTCCCA AGACCAAGAA GCCAGTTCTT
  AAGCAACACC AACCTTTAAA ATTCAAGAGA CAGAGCACAT TAATTAATTT ACTTGATTTT
  TTTTAAATGT GTCAAAATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60215894	NES15722363	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46025506					SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60215894	NES15722363	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:52119824 () rs orientation: forward

Symbol	Name	Function Class
Alcam	activated leukocyte cell adhesion molecule	within coordinates
Tssr141421	transcription start site region 141421	689 bp upstream
Tssr141422	transcription start site region 141422	1897 bp downstream
Tssr141423	transcription start site region 141423	1945 bp downstream