rs46027945 SNP Detail

Summary

• ID
  rs46027945
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:25757688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTCAGGC TCCTTATATT
  AAAGAGTTTC ATTAGTCGCC ATCACAGAAT GTCAAGTGCG ATTGTTCATT GTGCTCGTGT
  TCTGGTTTTA AACACAACGT GTGGGTTCCG CACAGCGTAA CCTCTTGAAC TGCAGCAAAA
  CCAGCTCTGC TCCCATCTTC AGCAGGAGAG GATGGCCAGT TAGACACAGT AGGAATGTCC
  S
  TAATTCAAAA CACTAAAATC TAAAACGCTC CAGCATCTGA AACTTTTTGA GAACTAATCT
  GATGCTAACA GGAAATTCTT TCTGTTGGCC CACTGTACAT ACACTTCATT CACAATATAG
  CACACACATG GCTTTCACAA TATAGCACAC ACATTACCTT CAGGTTATGT GTATTAGGCA
  TATAAAATGG CAGACAAGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52193837	NES15225009	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs46027945					SNP	G	C	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52193837	NES15225009	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:25757688 () rs orientation: forward

Symbol	Name	Function Class
Gm47930	predicted gene, 47930	1883 bp upstream
Gm66740	predicted gene, 66740	within coordinates
Rr218979	regulatory region 218979	1113 bp proximal
Rr218980	regulatory region 218980	1513 bp proximal