rs46029083 SNP Detail

Summary

• ID
  rs46029083
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129915623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACAATTT CCTATTTGTT
  TTTTAGGTCG GCCGGCAAGG TAGCTCAATA GATCGTTTAC CACAAAATGG TAGACATCTT
  GGACCCAAGT GATGGAAAGA CATAGCTTTA AATTTTCGGC CCTCTACACA CAGCCCGCAA
  TTTTCTTTGT TTCTTTTTCC TTAAAAAAAT AAATAAATAA AAGAAAAGAA AATCTTTAAA
  A
  CCGGCAATCC CAGCCCTAAG GAAGCGGAGT CAGGAAAATC AAGGAAGGCC AAGCGAGGCC
  ATAAAGTTCA AGGCTAACCT GAGACTCAAA AACGCAGTGA GTAGAACAAA GAAAATACAA
  AAACCACCCC ACCCCCACCC CTGGCCAAGA GTTTACCACG CATCTTTCTT TCCTCGCCTC
  CTTGTATACT ACGCCCTCGA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321692407	CHEV_5_130362652	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46029083					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129915623 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	within coordinates
Cpgi16684	CpG island 16684	185 bp proximal
Rr399383	regulatory region 399383	426 bp upstream
Rr621372	regulatory region 621372	within coordinates
Rr621373	regulatory region 621373	678 bp proximal
Tssr53498	transcription start site region 53498	357 bp downstream
Tssr53499	transcription start site region 53499	506 bp downstream
Tssr53500	transcription start site region 53500	634 bp downstream
Tssr53501	transcription start site region 53501	660 bp downstream