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rs46030306 SNP Detail
Summary
  • ID
    rs46030306
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:116698940 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATCCTCACAC TGGAGAAATG
    ACACAGCAAC AATTTAAATC TATATGAAAA AAATTTCTTT CAGTTTTCCA TTGTAAGCCA
    CTAAAGGCTA AAACATATGT CTTAACCAGT CCTGTTCAAT AACAGACAAG GAAAAGTTCT
    TTTCAGGAAA GGGTTTCCAC CTTTTTTGTT AAGGTTTGCT TAGGTACAGT TTGCAGATAG
    R
    TGAACTTGCT GGACTTCTGA TGCCAAGGGC AATATAATGC ATTTTTCAAA AGAAAAATTT
    TTTTTATTAG TCCTTTAAGA TGGAGGTGTA CCCTCTCAGA GGTGAAGGGG AGATGGGATG
    AGAGGAGGAA CCCTGTGAGG AGAGGCTTGG GGGGGGGGAG CAGCATTTGG GATGTAAATA
    CATAAATTAA ATTGAAGAAA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60435738 NES15935097 PERLEGEN MM_PANEL2 f SNP G G G G G G A G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs46030306 SNP G G G G G G A G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60435738 NES15935097 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:116698940 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13742 CpG island 13742 832 bp proximal
Frrs1 ferric-chelate reductase 1 mRNA-UTR
Noncoding-Transcript-Variant
Rr583800 regulatory region 583800 791 bp distal
Rr583801 regulatory region 583801 1150 bp distal
Rr583802 regulatory region 583802 909 bp distal
Rr583803 regulatory region 583803 677 bp proximal
Tssr31391 transcription start site region 31391 1685 bp downstream
Tssr31392 transcription start site region 31392 1603 bp downstream
Tssr31393 transcription start site region 31393 1576 bp downstream
Tssr31394 transcription start site region 31394 1539 bp downstream
Tssr31395 transcription start site region 31395 893 bp downstream
Tssr31396 transcription start site region 31396 1082 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory