rs46034184 SNP Detail

Summary

• ID
  rs46034184
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171124429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGG TATTACAGGC ACACCACCAA
  R
  TCTAGAGGTT TTGAATCTTA CTAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss119997273	PARCsnp_1.12713	PARC_SEQ	INBRED	f	SNP			G	A
ss119999094	PARCsnp_1.01815	PARC_SEQ	INBRED	f	SNP			G	A
ss146159501	ENSMUSSNP3300244	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320117877	CHEV_1_173226987	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs46034184					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171124429 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1022	CpG island 1022	1974 bp distal
Rr28967	regulatory region 28967	1229 bp distal
Rr31956	regulatory region 31956	29 bp distal
Rr372447	regulatory region 372447	200 bp downstream
Tssr15033	transcription start site region 15033	1845 bp upstream
Ufc1	ubiquitin-fold modifier conjugating enzyme 1	1854 bp upstream