rs46034919 SNP Detail

Summary

• ID
  rs46034919
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54358880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTCACTTT AGAAGAATCT ACTGTGTTGC CGTGTTTTCA
  CAGTGATGCT CTCGATGACC AAGAGCAAAC AAGATTAGTA TTTGAGAGCA TGTTTCAAGG
  W
  CATGACTCAG CTCAAAACCA GAAGTCAAAT ATCTATGTAA CTAAGATGTA TCAGTTGCAT
  TTAGGCAGAG TTACTGTCTC TGTTGGATCT GGTCCTGCC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62394292	NES17237534	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46034919					SNP	A	A	A	A	A	A	T	A	A	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62394292	NES17237534	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54358880 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Gm30275	predicted gene, 30275	within coordinates
Rr292698	regulatory region 292698	1880 bp distal
Rr292699	regulatory region 292699	521 bp proximal
Rr301183	regulatory region 301183	823 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Trdd2	T cell receptor delta diversity 2	803 bp upstream
Trdj1	T cell receptor delta joining 1	1715 bp upstream
Tssr125528	transcription start site region 125528	1030 bp downstream
Tssr125529	transcription start site region 125529	47 bp upstream
Tssr125530	transcription start site region 125530	452 bp upstream
Tssr125531	transcription start site region 125531	484 bp upstream
Tssr125532	transcription start site region 125532	502 bp upstream
Tssr125533	transcription start site region 125533	614 bp upstream
Tssr125534	transcription start site region 125534	690 bp upstream
Tssr125535	transcription start site region 125535	719 bp upstream
Tssr125536	transcription start site region 125536	738 bp upstream
Tssr125537	transcription start site region 125537	767 bp upstream
Tssr125538	transcription start site region 125538	807 bp upstream
Tssr125539	transcription start site region 125539	1700 bp upstream