rs46038010 SNP Detail

Summary

• ID
  rs46038010
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:12328256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTGGTGA CCATGGAAGA
  CAGGCACCTG TGTCACAGAG AGCTCCTCAG AGGGGAGAGT AAGAGGTAGG GTCATACCCT
  GGCTTACTCA GAGCCCAGCT GCATTTGAGC CCAGTTGTTG TGTTCTTTTG TGTCATTTAT
  CTAAGGTTCC AGAGAACTAA CCCTGAAGTT AGTAAGGGTT GCCACATGTA ACTCACTGTG
  Y
  GGAGCTGGCT CTTGGTCAGC CCATTGTTTG GCTGTTTATT TTTTGAGAAT TTTAATATGG
  AGGGATTCAC ACCAAATCAA AGCTGTCCCC TTGTAAGATG CACACACAAA TGGAGGCTTC
  GAAGAATCGA CTTGAGGACT CCCTGTGAGG TGTCCTAGAA TCGGTCGCCC CTTCTCATAG
  GCGTTAGTAG AAAGGATGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60572192	NES16031344	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C		C	T	C		C
ss322497656	CHEV_8_12278256	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46038010					SNP	C	C	C	C	C	T	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60572192	NES16031344	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:12328256 () rs orientation: forward

Symbol	Name	Function Class
A230072I06Rik	RIKEN cDNA A230072I06 gene	569 bp upstream