rs46040827 SNP Detail

Summary

• ID
  rs46040827
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:108775886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTC CCTGCTCCTA CCAATCACAA
  W
  TGTCATGGAC AACCTTAACA AGATG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61215766	NES16730269	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	T	A	A	T	A	T		A	A	A	A		T
ss149026485	ENSMUSSNP5469490	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss321637446	CHEV_5_109057039	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46040827					SNP	A	A	T	A	T	A	A	T	A	T	A	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61215766	NES16730269	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:108775886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16204	CpG island 16204	1124 bp proximal
Gak	cyclin G associated kinase	within coordinates
Rr616724	regulatory region 616724	1709 bp proximal
Rr616725	regulatory region 616725	2000 bp proximal
Tmem175	transmembrane protein 175	1763 bp upstream
Tssr47844	transcription start site region 47844	1771 bp upstream
Tssr47845	transcription start site region 47845	1970 bp upstream
Tssr52443	transcription start site region 52443	1651 bp downstream
Tssr52444	transcription start site region 52444	1666 bp downstream
Tssr52445	transcription start site region 52445	1692 bp downstream