rs46042099 SNP Detail

Summary

• ID
  rs46042099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127292572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTGGGAG AAGCCATGTC
  CACGCTCTCG GAACTCCTTC CCTCGGTCAA GTCCGGCTGT CCCGCGTGTC CTCGTCTCTT
  CCGCTCCCGG CCTGCGGCGT TCGGGCTCAC CCGGGGACCC GCGTGCTTCT AGGCGACCGC
  AGAAGGTCGG CCTTGGCCGC GATCGCCCGT GGAGACCTGC TGCCCGAGCC CACCTACCTC
  Y
  GCGCGAGGTG CCGTGGGGCC ATGGTGCGCC GAGTGGGCTG CGGGCTGGGC CGGCGACAAG
  CGCTAAGCGA CTGCTGCTGG TGGCGCGGGG AGAAAGAGGA GGGCTTCTTC CTTCGCCGCG
  CGCCGGGAGA GCGATGAGCT CATGGACAGC TCCCAGAAAT ATGTCTATAT GCACCACTGC
  CTGCCGGAGC TCGCGAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135865101	ENSMUSSNP4125122	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320954689	CHEV_3_127201841	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46042099					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127292572 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13791	CpG island 13791	within coordinates
Rr584800	regulatory region 584800	68 bp proximal
Tssr35576	transcription start site region 35576	63 bp downstream
Tssr35577	transcription start site region 35577	126 bp downstream
Tssr35578	transcription start site region 35578	153 bp downstream
Tssr35579	transcription start site region 35579	172 bp downstream