rs46042879 SNP Detail

Summary

• ID
  rs46042879
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158100991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGAAGCCC TTCTTGGGGC CGCTTAGTGC TGCCTCCTGG
  TGGCAGAGAG AGGAACTGCA GAACTCAGGG CGATCCTAGT TCAGATCAGA CCAGGTTGGG
  K
  GGGGGGGCGG GGCAGGTCCC AGGGGATCTG CTTTCCTATC CCAGAACGCA TGTTCCAGGC
  CATGCAGGCC ATCGCAGGGA TGCAAACAGA TTCCCCCAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148112324	ENSMUSSNP891483	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320588300	CHEV_2_158084807	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46042879					SNP	G	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158100991 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	within coordinates
Cpgi12591	CpG island 12591	889 bp distal
Gm34571	predicted gene, 34571	1027 bp upstream
Rr568712	regulatory region 568712	1781 bp distal
Rr568713	regulatory region 568713	967 bp distal
Rr568714	regulatory region 568714	318 bp distal
Rr568715	regulatory region 568715	53 bp distal
Tssr727	transcription start site region 727	852 bp downstream
Tssr21302	transcription start site region 21302	962 bp downstream
Tssr21303	transcription start site region 21303	862 bp downstream
Tssr21304	transcription start site region 21304	839 bp downstream
Tssr21305	transcription start site region 21305	825 bp downstream
Tssr21306	transcription start site region 21306	795 bp downstream
Tssr27222	transcription start site region 27222	108 bp upstream