rs46043980 SNP Detail

Summary

• ID
  rs46043980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:20466506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGTTTAA GGAGAGTAAG
  AGAAGTGCCT AAAGAATAGT TAGGAAGAAT TTTACTGAAC TGCTCACATT AGAGAGAGTT
  TCCCACTTAG GAAACTTCAA TGCCTTGCCA ACTTATTTAA ATTGGACTTA AAACAATGTT
  TGCAGACTTT AAAATAAATT GAATAACAAG GGCATTGTGT TAGCCTTACA TCAATGTGGA
  R
  AATCCAGGCA TCTTACATGG CCCATCCTGT GGACCCCTCT GTTCACAGAA TGAGCTAGCA
  TTTCTTAGGA AATACATCAA TTGATATCAC ACTCACCAAA ATGTAATTTT AAGTGCAAAG
  GCTTAATATA ACATTAATGC CTACGTGATT TTACATAGGA AATGGACAGG TCTCTTTGAT
  CATCTTCTGT GATGGTTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52176226	NES15232409	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs46043980					SNP	G	G	G	G	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52176226	NES15232409	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:20466506 () rs orientation: forward

Symbol	Name	Function Class
Pde7b	phosphodiesterase 7B	within coordinates
Rr226877	regulatory region 226877	within coordinates
Tssr96955	transcription start site region 96955	1226 bp upstream