rs46043988 SNP Detail

Summary

• ID
  rs46043988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67619936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATCTCCC TGCTTCATTT
  TTCTTCATGG CCCTTTCCAC CATCTATCCC AGATAGGTAA ACCTTCTCTC TCCAGGGCCC
  AGATAGGTAA ACCTTCTCTC TTCAGGGTCA GGCAGCAAAT ATTTTGGGTT TCATAAGTCA
  GAGGGTTCCT TGGTCCACTG CTCAGAATCC CCAAACAACC TAATGAAAAT GCATGTGTAA
  R
  ACTGTCTTCC AATAAAACTT TACGGAGAAA CTGAAAAAAA GCAGTAGAAG CATCCGTATT
  GGCAGCAGGG ATGTTAGTGT CAGCTACTAA ACATGGGCAA GGAGTGCGGG TGCAAGCTAG
  ACAAGTCAAA GGGACCTGGA CAATAAGACT CTTCCTGCTG CAGACTCTTC CTGCTGGGAC
  CGCTTTACTC TCGGGGACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61411917	NES16794250	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A		G	G	G		G
ss322992310	CHEV_9_67560461	CHEVERUD	SCREENING_POP	f	SNP						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46043988					SNP	A	G	A	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61411917	NES16794250	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67619936 () rs orientation: forward

Symbol	Name	Function Class
Gm67856	predicted gene, 67856	791 bp upstream
Rr681959	regulatory region 681959	630 bp distal
Rr681960	regulatory region 681960	905 bp distal
Tssr90350	transcription start site region 90350	1744 bp upstream
Tssr90351	transcription start site region 90351	838 bp downstream