rs46044002 SNP Detail

Summary

• ID
  rs46044002
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:10268194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATACATTG TCCACACTTA
  CAAAATCAGA TTAGTATGAT TCCTTCTTGG ACATAAGTAT TTATATAAAA CATACACAAG
  CTTTCTCTCT AACACATGAA TGTTTATATA CACAAATAGC AGCTTTTACC TGTACATTTT
  AAAAATGTTT TCTGAGGGCT AGAAAGATGG CTCAGTAGTT AAGAGTCCAG ACAGCTTTTC
  Y
  AGAGGGTCTG GATTCCATTC CCAGCACACA CATGATGGCT TACAACCATT TATATGTCCA
  CCCCAGAGGA TTTGATACCA TATTCTCACC TGTGTGAACA CTGTACACAC ATGATGCATA
  TATACACACT CATACATATA AATGAAAGGA TTATTAAACA GTCTTCCATG GCAATCTCAG
  TTTGAGAGTG CTGGGCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148665164	ENSMUSSNP6885773	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss324255780	CHEV_13_10217404	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46044002					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:10268194 () rs orientation: forward

Symbol	Name	Function Class
Chrm3	cholinergic receptor, muscarinic 3, cardiac	within coordinates
Rr281932	regulatory region 281932	1807 bp proximal