rs46044802 SNP Detail

Summary

• ID
  rs46044802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:59926633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCAAAAG TCCCCTATAC
  CCTGCCCCTC CTTGCTCCCC AACCCACCCA CTCCTGCTTC CTGGCCCTGG CATTATCCTG
  TACGGGGGCA TATAATCTTT GCAAGATCTT TTACTGGTTG TTTGTTTGCT TGTTTGTTTG
  TTTTTGTCCT TGAATGAACA TGTAGTATGC TTGCTAGATA ATCATTCTGC CACATTACCC
  Y
  ATCTTTAGAC TTAAAACTTT ACTTTTAAAA AAAGAATTAC TTATTTTATA TATTTCAGTA
  CACCGTAGCT ATTTTCAGAC ACACCAGAAG AGGTCATCAG ATTTCATTAC AGATGGTTGT
  GAACCACCAT ATGGTTGCTG TGAGTTGAAC TCAGGACCTT GGAAGAACAC TCAGTGCTCT
  TAACCTCTGA GCCCTCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61169721	NES16674040	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46044802					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61169721	NES16674040	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:59926633 () rs orientation: forward

Symbol	Name	Function Class
Gm52849	predicted gene, 52849	1907 bp upstream
Tssr46351	transcription start site region 46351	1905 bp upstream