rs46045282 SNP Detail

Summary

• ID
  rs46045282
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45436335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCTG CCTGATGTCT ATATTCTGCC
  K
  CTGGCAGAGG TCTCACTGCC AATGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss149145030	ENSMUSSNP2410103	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46045282					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45436335 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19089	CpG island 19089			959 bp distal
Cpgi19090	CpG island 19090			146 bp distal
Cpgi19091	CpG island 19091			707 bp proximal
Lmtk3	lemur tyrosine kinase 3			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr646577	regulatory region 646577			1521 bp distal
Tssr66638	transcription start site region 66638			1521 bp downstream
Tssr66639	transcription start site region 66639			1304 bp downstream
Tssr66640	transcription start site region 66640			477 bp upstream
Tssr72472	transcription start site region 72472			1880 bp upstream