rs46046142 SNP Detail

Summary

• ID
  rs46046142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148895214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTT TTCTTCTTCT ATAGTGCTTC
  Y
  TAAAATGTTG TTAAAGGACT GGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144698585	ENSMUSSNP4600905	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss321719772	CHEV_5_149769980	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46046142					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148895214 () rs orientation: forward

Symbol	Name	Function Class
1810059H22Rik	RIKEN cDNA 1810059H22 gene	within coordinates
Cpgi17084	CpG island 17084	743 bp proximal
Gm15406	predicted gene 15406	within coordinates
Gm15409	predicted gene 15409	within coordinates
Gm52833	predicted gene, 52833	within coordinates
Rr111639	regulatory region 111639	within coordinates
Rr124806	regulatory region 124806	186 bp proximal
Rr378799	regulatory region 378799	252 bp downstream
Rr378800	regulatory region 378800	983 bp upstream
Tssr49867	transcription start site region 49867	859 bp upstream
Tssr49868	transcription start site region 49868	915 bp upstream
Tssr49869	transcription start site region 49869	1387 bp upstream
Tssr54596	transcription start site region 54596	876 bp downstream
Tssr54597	transcription start site region 54597	1050 bp downstream
Tssr54598	transcription start site region 54598	1155 bp downstream
Tssr54599	transcription start site region 54599	1571 bp downstream