rs46046969 SNP Detail

Summary

• ID
  rs46046969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156959224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAATTCTC AGATCTGTCA CCTCTTTGCT CACCTCCTTG
  CTCCCATCTC TGCTCACTCA TCACAATCAC TGCAAAGATC AAATGACCCC AGAGACATCC
  R
  CCCTATTGTG CATTTTAACA AAACTGACTC AAAATGAAAA CAAACCTGAA ATGATCCTAT
  AACTATTTTG AATTGGCTCA ACTATGAACA GATATCTGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148092321	ENSMUSSNP4833204	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46046969					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156959224 () rs orientation: forward

Symbol	Name	Function Class
Rr568436	regulatory region 568436	20 bp distal
Rr568437	regulatory region 568437	156 bp distal
Rr568438	regulatory region 568438	224 bp proximal
Rr568439	regulatory region 568439	1727 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron