rs46047151 SNP Detail

Summary

• ID
  rs46047151
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163483555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATACAGC TATTTTATAC
  TCTTTTGAAG GTGTTTACAC AGCTATATTA TTATTGGCTA GTAAAGCAAC CGTATAATTT
  ATTTGTTTGT TTGTTTTTCT TTTTGGTTTT TTTGAGACAG GGCTTCTCTG TATAGCCCTG
  GCTGTCCTGG AACTGACTTT GTAGACCAGG CTGGCCTCTG CCTCCCAAGT GCTGGGATTA
  R
  AGGCGTGTGC CACCACCGCC TGGCACAACA GTATAATTTT AATTTGGCAG AAAACTCTGT
  CAGCAATCAG CAAGATCAAA GCAGTTTATA GTTTTCCTCA GAATTCAGAC TGAGGAGGGG
  TAGGGAAGTT TTCTCAAGGA CGGTTATTTC TGGCAGCTGT GGTCTTTATG ACCACTAGTC
  TGTCCCTGAA GATAGGGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss148207660	ENSMUSSNP4227084	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs46047151					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163483555 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397465	regulatory region 397465			1022 bp upstream
Rr569443	regulatory region 569443			833 bp distal
Rr569444	regulatory region 569444			987 bp distal
Rr569445	regulatory region 569445			within coordinates
Serinc3	serine incorporator 3			Intron
				Noncoding-Transcript-Variant
Tssr27320	transcription start site region 27320			1668 bp downstream