rs46047474 SNP Detail

Summary

• ID
  rs46047474
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77500112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAACGCAG GGCTGAATAA
  GGCAGTTGGC AAGAGGATTA CTGGCTGTGG GGAGTTGCAG ATTAGAGAAT GAGGAAGAGA
  TGATTCAAGC CCCATGTGGG GCCAACTCAG GCAATGTCAG TTTCTGGCTT TTCAGACCCT
  CTGCCTGCTC CGGCCTATAA TTCAGGTTCT CTGCCACTCT CCCAGCTTAC ACTGCAGACA
  R
  TCTCCCTGAG TGAACCTCCA GCCTGCTCTT CTCCGGACTG CCTCTTTCCT ACCTGGGAGC
  CCCTCCTCCC CACCTCAAGT GGCTTTTCTT GACGGGCTCT TTCTAGTTGT TTAGGACACC
  TTTTGATTCT TATGTCCTCA TAAAGAAGAT TCTCCCTCCC CTGTTTCCCC GCTCTGGCCC
  TCCTGCCCAC AAAGTTACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61429605	NES16809157	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46047474					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61429605	NES16809157	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77500112 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr14	DNA segment, Chr 9, Derry C. Roopenian 14	1058 bp proximal
Rr368830	regulatory region 368830	116 bp downstream
Rr683375	regulatory region 683375	8 bp distal