rs46047550 SNP Detail

Summary

• ID
  rs46047550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:5298598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTTCCTC TCTCATTTAT
  AAAGCATGTC TGCCATTAAA CATAAGAACC TTGAGCAGAC TAGTTCGATT TGGTTCCATT
  ATTTCTCTAT CCACCTAGGT TCCCTCTTCT TTTTCAGCTC CAGGCTGTCT CCCAGGCTCG
  AACCCGGATA TGAAAGCCTC AGGCTGGCCC CAACAGTTTT ATTTCCAGAG AACTTGTTCT
  Y
  TGACTTCCAT GGGTATGCCA TGCTATGTGA TCCATTTAAT AATAAGTAAA TGTAATAAAC
  AATTTGAAAA TATACACTGG AAAACTGTTT GACATTCTCA GCATTGACAT TTTTGTCTTA
  AATAAGTGGG AAACTTGTTG CACAAATTCA TGGTGCAAAG CCTATGCTTT ATTTATTTAT
  TTTTAAGGAA CTCAACCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148482000	ENSMUSSNP6997300	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46047550					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:5298598 () rs orientation: forward

Symbol	Name	Function Class
Rr370760	regulatory region 370760	within coordinates