rs46048466 SNP Detail

Summary

• ID
  rs46048466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:89039915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTAAGTTT GGACCATGAT CATGTTTTAT GTTATCTTCA
  TCATAGTCTG TAAAGTGATT TTAAATATGA CTCTCAACAT ATGTTTCAAA AAAATGCACA
  Y
  CATCAAAAAC TAACTAAATA AACTCTATAA AATACTTTCT GTATATTCTG TGCTTTTGTC
  TTGGTCACTT TTGAGGTGGT ATCTGTGGGA AAGAGTGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148514004	ENSMUSSNP5274982	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss325272440	CHEV_16_89243272	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46048466					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:89039915 () rs orientation: forward

Symbol	Name	Function Class
Gm35004	predicted gene, 35004	219 bp downstream