rs46050502 SNP Detail

Summary

• ID
  rs46050502
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170824320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATA ATGTTTATTA TAAGTTATTT
  R
  TAAGTTCAAG AGATTGGAGG CAAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146150257	ENSMUSSNP4230540	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320115453	CHEV_1_172926882	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46050502					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170824320 () rs orientation: forward

Symbol	Name	Function Class
D1Dcr17	DNA Segment, Chr 1, Derry C. Roopenian 17	1025 bp distal
D1Mit146	DNA segment, Chr 1, Massachusetts Institute of Technology 146	1014 bp distal
Rr396544	regulatory region 396544	942 bp upstream
Rr396545	regulatory region 396545	1680 bp upstream
Rr423178	regulatory region 423178	71 bp proximal
Rr423179	regulatory region 423179	201 bp proximal
Rr423180	regulatory region 423180	1080 bp proximal
Tssr9941	transcription start site region 9941	1814 bp upstream