rs46052342 SNP Detail

Summary

• ID
  rs46052342
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19117848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATCCTTT GGGGTAGGCG
  GGTGAGGAAT AAGAATTAAC AATTAAAAGT CCAGCAGAAG AGGAGGAGCG GAGACTATCA
  GTCCTGGGGC CTTGACAGCG ATGCCACTGC TGTGTGTGTT GCCTTGCTGT TCCCGGGTGG
  TGGCATGTCA AGGAGAGTTC CCCAGAGCGT ACGTTGATGA CAGAGAGCCT GTGTCTTACT
  W
  CTTCTGTGCC CAATTTTCAG GGTCATGGAG TCCTGGAGAT GCCCTCGGGC ACTGGGAAGA
  CAGTGTCCCT ATTGGCCCTG ATTGTGGCCT ATCAGCGGGT GAGTGGCCTT CTGAGTGCCT
  GGAGTGGGGG CTGAGGGGTG GGGCTGGATG GGGCTGAGGT CCCTGTCACC CACAGGCTTA
  TCCGCTGGAG GTGACCAAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148474326	ENSMUSSNP2286405	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46052342					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19117848 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18481	CpG island 18481	1263 bp distal
Ercc2	excision repair cross-complementing rodent repair deficiency, complementation group 2	within coordinates
Gm26852	predicted gene, 26852	within coordinates
Rr400148	regulatory region 400148	1834 bp downstream
Rr643124	regulatory region 643124	1873 bp distal
Rr643125	regulatory region 643125	1905 bp distal
Rr643126	regulatory region 643126	1920 bp proximal
Tssr64844	transcription start site region 64844	1871 bp downstream