rs46052978 SNP Detail

Summary

• ID
  rs46052978
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58665184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAAAAATT GTGCACATGA
  ATTTCCACCG TGAATTATAC AGAATTCTCT CTCTTTTTTT TTTAAATCAA AGGACTCCTA
  CTATGTCCCT GAAACATAAG TTCCGTTGTG ACAAGTGAGT GCGAGGAAAC TTTGGGGTGG
  AGCATGCATT TATAACCCAA TTTTTTCGTT TCTTTTAAGA AGATTTGGTT TTATAGGTAT
  W
  TTGTCTATAT TTAAGTATAT CACACTGGTG TCCACCTGGT TCATGTGGAA GCCATAACAA
  TTCAGGTACC CTGGAACTTG TAGTTACAGA TGGTGGTGAG CTGCCATGTG GCTTCCGACC
  TAGCTCTCCA GTCTTTGTAA TCCAGTTCTG AGTGACCTAA TTTATATACT AATTTATATG
  CCTTCGTCTT TCTCTTCTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss146566713	ENSMUSSNP470611	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs46052978					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58665184 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11111	CpG island 11111	467 bp distal
Pnlip	pancreatic lipase	within coordinates
Rr361109	regulatory region 361109	1584 bp distal
Rr365894	regulatory region 365894	217 bp proximal
Tssr157271	transcription start site region 157271	1687 bp downstream
Tssr157272	transcription start site region 157272	1671 bp downstream
Tssr157273	transcription start site region 157273	524 bp downstream
Tssr157274	transcription start site region 157274	521 bp downstream
Tssr157275	transcription start site region 157275	489 bp downstream
Tssr157276	transcription start site region 157276	463 bp downstream
Tssr157277	transcription start site region 157277	230 bp downstream
Tssr157278	transcription start site region 157278	384 bp upstream
Tssr157279	transcription start site region 157279	401 bp upstream
Tssr157280	transcription start site region 157280	417 bp upstream
Tssr159961	transcription start site region 159961	1582 bp upstream