rs46054232 SNP Detail

Summary

• ID
  rs46054232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153060857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAAAGTTCA TCTTACATAT CTGAGCTACA
  CAACAGGTTT TGACAGGACT AGTGAAATGG TTACTATTGT CAAGAAAATG AACATGGCTA
  TCATGCCAGT TACTCCTTTT TGGTGACAAT TATACATGAT CGAGCATCAT GGCTTCCGAT
  Y
  CCTGGCAGTG GTGACTGGAA CACCATGGAG AGCAGGAAGC AACAGTAACT ATGAATGTGA
  AAAGTTGGGT GATCAGAGGA AAGCGCTTCA GCTAAGAGAC AGAGAAACCC CCGCACTAGG
  TGTCATCATA GTTGACAGGA CACATACACA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60822418	NES16493709	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C		C	T	T		C
ss320071224	CHEV_1_155032241	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46054232					SNP	C	C	C	T	C	C	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60822418	NES16493709	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153060857 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	659 bp proximal
Lamc2	laminin, gamma 2	within coordinates
Tssr14250	transcription start site region 14250	900 bp downstream
Tssr14251	transcription start site region 14251	960 bp downstream
Tssr14252	transcription start site region 14252	991 bp downstream
Tssr14253	transcription start site region 14253	1014 bp downstream
Tssr14254	transcription start site region 14254	1031 bp downstream