rs46057482 SNP Detail

Summary

• ID
  rs46057482
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34575257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGATACAT GCATATACAT
  ACAGCTGTAT ATGTATATGT ATATCTCAAG ACATTAATCC CAGGACAAAG GAGGCAACGG
  CAAATGAATC CCTATGCTTT TCTGTTATCC ATGCGGTCTC TTTCCACCAA CGGCTCTCAC
  TGGTGAAGAC TGTGACAGGA AAAGCCATAG TTGCCGGCCC TGGGCTCTCA GGCACTGACA
  K
  AAGGATGACA GCATCAGTGT CTTCTTCCAG GCCTCCCTCT TCCTGATCAG AGGCAGGGCC
  GACGGTGCAG CCACCGCTGA GCAGCCTTCT CGCCCGCACA ACCTCCCTCA GCCTCCCTGA
  GTCCCCCACG CAGCCCCAAT GGAGTCTGCG CAGGCGTGCT GGGATGGGTG GGGGTCACGG
  AACAAACCCT CTCCGCCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60592240	NES16320141	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46057482					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60592240	NES16320141	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34575257 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	12 bp proximal
Dctn6	dynactin 6	within coordinates
Rr400814	regulatory region 400814	243 bp upstream
Tssr80889	transcription start site region 80889	314 bp upstream
Tssr80890	transcription start site region 80890	261 bp upstream
Tssr80891	transcription start site region 80891	340 bp downstream
Tssr80892	transcription start site region 80892	408 bp downstream
Tssr80893	transcription start site region 80893	689 bp downstream