rs46058325 SNP Detail

Summary

• ID
  rs46058325
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60962540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACATAGTT AAACAATGTG
  CTATAAGTGG TGGTGCTAAT TCCTAATTCA CATAGAAATT ACATTTTTAG TGATTCAAAG
  ATGACATCAA AGGTCAATTC TTCATGGCAA TGAATGAAAA ATAACAGAAC ATTAAAGACA
  AAGCAAAGGA CCAGGAAATG AAAAGCTAAT GTTCAAAAGC CTCAAATATA GTATGAAGAC
  W
  GTACTCATTA ACTCCATTAC AAAATTAAAT TCAGCAAGAA CATATTTTCT TGGTGACTGT
  GCCAATTCTT CCTCTTAAAA TTATTTTTAA TTTTCATGTG CATACATGTT AGTCGTAAGT
  GCCTGAAAAG GCCAGAGACA TCACATCCCT CCAAGTTACA AGTGGTTGTA AACCACCCAG
  TGTGGGTGCT GGGAATGGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52343456	NES15282515	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46058325					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52343456	NES15282515	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60962540 () rs orientation: forward

Symbol	Name	Function Class
Gm55864	predicted gene, 55864	1526 bp upstream
Rr219927	regulatory region 219927	861 bp proximal
Rr228137	regulatory region 228137	1462 bp proximal
Sgpl1	sphingosine phosphate lyase 1	within coordinates