rs46058602 SNP Detail

Summary

• ID
  rs46058602
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:77969408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAAGGTA CCTTAGGGGT
  TGAAATTTCA CAGGAGAATT AGCTACTCGG AACTTGTTCA GTAGTTCTTG ATCTTGGGTG
  TTTTTTCTGT TTTTAACTCT AACATGCTTA ATAAACACAG ATTGTAATTT TTGAATTAAT
  AGCATGTGCA TCAAAAATAT CAGTGCACGT GTTATTTCCA TGAGGACTTC CCGTGGTGAC
  R
  GCGACTCTCT GTTATGTTTT TCTTGACCAA AAACACTCCT AAGCTGGTAT GAGTAGGTCA
  TTCAAAGGAA ATTTCTGTGC TACTTTCTTT CAGAAAAGAA AGCTTTCCTC AGCTACTGCT
  TCTGTGACAT GATGTGAGAT CCAGAGAGCA GCAGTCCATA ACCAAATCGC GTCGATCATG
  AAGACTTTGA TGTGAATCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63192711	NES17468828	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46058602					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63192711	NES17468828	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77969408 () rs orientation: forward

Symbol	Name	Function Class
Gm58860	predicted gene, 58860	1901 bp downstream
Pstpip2	proline-serine-threonine phosphatase-interacting protein 2	Intron
Rr541209	regulatory region 541209	1468 bp distal
Rr541210	regulatory region 541210	1314 bp proximal
Tssr152066	transcription start site region 152066	480 bp upstream
Tssr152067	transcription start site region 152067	512 bp upstream
Tssr152068	transcription start site region 152068	542 bp upstream
Tssr152069	transcription start site region 152069	643 bp upstream
Tssr152070	transcription start site region 152070	758 bp upstream
Tssr152071	transcription start site region 152071	789 bp upstream
Tssr152072	transcription start site region 152072	810 bp upstream
Tssr152073	transcription start site region 152073	843 bp upstream
Tssr152074	transcription start site region 152074	872 bp upstream
Tssr152075	transcription start site region 152075	892 bp upstream