rs46059748 SNP Detail

Summary

• ID
  rs46059748
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36555968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCCTGGCT CCGCCCCACC
  CCGCCCCGCT CCGCCCCGCC CCGCTCCCTC CACTAAACCT CAGCCTGATT CTCAGGCTGG
  ACTAGAGACG TGCGCACACA ATCAGGGTTC AGAGGGACCT CAGGGATGCC AGATCTCAGG
  CCAGGGTCAC CCTGGAGGCC AGAGGCTGGA ATTTTAGAGA CTTTTGAGGA GGAAAACGTG
  S
  CTCTGTGGTG CAGGGAGGGA GGGACAGTGT CGAATTCATT TTCAGAGAGC TCAGCCCACA
  AAAGTTAAGA ATCCTGTCTC TAGCCACATG AACATTTTAT ACAGCTGCCA GAAAGTCACT
  GATCCAACCC TGCCCCAAAT CATCAGAGCC AGGCAGCTTG CCTAAGGAAA CAGAGCTTCT
  CCAGGGGCCA CTTCAGGGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147602906	ENSMUSSNP2428801	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs46059748					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36555968 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7030	CpG island 7030	203 bp distal
Rr311658	regulatory region 311658	within coordinates
Snx31	sorting nexin 31	250 bp upstream
Tssr134019	transcription start site region 134019	475 bp upstream
Tssr134020	transcription start site region 134020	284 bp upstream
Tssr134021	transcription start site region 134021	244 bp upstream
Tssr134022	transcription start site region 134022	231 bp upstream