rs46060128 SNP Detail

Summary

• ID
  rs46060128
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130552482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AGGCTTCATG GCCATGGCGT TTGACCTGAA GGTTAATGGT GTGAGCAGCC
  Y
  AGATAAACTG GGCTAGCCTG GTGAGGCCAG GACGATTTAA GAGAACTCAG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147462497	ENSMUSSNP3016516	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46060128					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130552482 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	within coordinates
Sdc3	syndecan 3	within coordinates
Tssr39284	transcription start site region 39284	1836 bp downstream
Tssr39285	transcription start site region 39285	1772 bp downstream
Tssr39286	transcription start site region 39286	1705 bp downstream
Tssr39287	transcription start site region 39287	1691 bp downstream
Tssr39288	transcription start site region 39288	1647 bp downstream
Tssr39289	transcription start site region 39289	1526 bp downstream
Tssr39290	transcription start site region 39290	1519 bp downstream
Tssr39291	transcription start site region 39291	1373 bp downstream
Tssr39292	transcription start site region 39292	1290 bp downstream
Tssr39293	transcription start site region 39293	695 bp upstream
Tssr39294	transcription start site region 39294	850 bp upstream
Tssr39295	transcription start site region 39295	1016 bp upstream
Tssr39296	transcription start site region 39296	1042 bp upstream