rs46060279 SNP Detail

Summary

• ID
  rs46060279
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:74855149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTGCCTT ACAGAATTGT
  AGATAACCAG GAAAACCAGG CATTTCAATG ACCTGAAAAC AAAGAGTCAC TTATGGGATA
  AAAACTATCT TTAAAATAAA AGGGAAGGTT GGAGGAGGAA CCTGTGTGTG CACAGGGGAG
  GGACCTGCAC TTCACCTTGG GAGAAGGAGG CAGGTACTCG AAGCCTGCTG CGAGGATTGC
  R
  GTTAGATCTG GTTCTACTTA ACTTCTAAAT TGCCGGTCTC AAAGAGGGAG CAGGAGACTC
  ATTAATGAAA CCTGCGAATG ACATTCACCT GCAAAGTGTT CCAAACACCA GAAAGAACAG
  AAAAATATAA AGGGTCTCTG CAGAGGTCAG AATCTGCCAG GAAATGACAG AGCTGAACCA
  GGAGAGACGG CAGAACACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61183434	NES16691599	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46060279					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61183434	NES16691599	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74855149 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lnx1	ligand of numb-protein X 1			Intron
				Noncoding-Transcript-Variant
Rr613329	regulatory region 613329			1747 bp distal
Rr613330	regulatory region 613330			within coordinates