rs46060612 SNP Detail

Summary

• ID
  rs46060612
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72322913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggcagaggc aggcggattt ctgagttcga
  ggccagctgg tctacaaagt gaattccagg acagcctggg ctaataaaaa gaaaccctgt
  ctagaaaaaa acaaaaAAAA CAAAACAAAA TAACAAAAAA AAGTAAACCC AAAGAAGATG
  Y
  ACATTCTCAC ATATTTAAAT ATTAAATGTA ACTATTTTCT TCTTGATGGC TTCCTTGTGC
  GTGTGTTTAC GTGATCATTC TAAGTTTAAT AACTTTTCCT TTTTCTTGCT TTTAGCACAG
  GGGACGTGAG AAGAAAATCT GATCAGGGCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss144651947	ENSMUSSNP858198	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss319788275	CHEV_1_72330328	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46060612					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72322913 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	282 bp proximal
Pecr	peroxisomal trans-2-enoyl-CoA reductase	within coordinates
Rr412794	regulatory region 412794	768 bp distal
Rr412795	regulatory region 412795	495 bp proximal
Rr412796	regulatory region 412796	626 bp proximal
Tmem169	transmembrane protein 169	641 bp upstream
Tssr114	transcription start site region 114	518 bp downstream
Tssr115	transcription start site region 115	534 bp downstream
Tssr116	transcription start site region 116	551 bp downstream
Tssr7298	transcription start site region 7298	613 bp upstream
Tssr12164	transcription start site region 12164	470 bp downstream
Tssr12165	transcription start site region 12165	494 bp downstream