rs46060687 SNP Detail

Summary

• ID
  rs46060687
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127291392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAGTGTT CTTCAAAAAG
  TTCACAGTAC TAGGAAAGAC AGCATTCCCT TCTGTTGGGA ATTACCTTTC TGTCTAATAG
  TAACTATATA GTTACTCTGT TTCTAAATAG GAATCCAGTT CTCTTTGGTA GTTCCTTCCT
  TGCCATTAGC AAATCACATC TCAGAATAAA ATGCCATCTG AACAGGCAGG AGGGCAACCT
  W
  CCACTGTGAG GACCTAAGAG CTAAGTGAGG AGGAGGTCCT GGCTATGGTG GCAGGTGCAG
  AAAGCCTAGC CATGAAATCT CAGACCACTA GGGAGTGGAG TACCACGCTC CCAACCCCGT
  CAGCCCCCAC CACACTTAAT TTTTAGAGAT AGGGTCTTAA CTATGTAGCC CCAGTTGTCC
  TGGGATTTCC TAGGCAGACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61079247	NES16587046	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	T	A	A	T	T	T		T	T	T	T		T
ss135865086	ENSMUSSNP6532684	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						T
ss320954683	CHEV_3_127200661	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46060687					SNP	A	A	T	A	T	A	A	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61079247	NES16587046	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127291392 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13791	CpG island 13791	589 bp proximal
Rr584800	regulatory region 584800	1248 bp proximal
Tssr35576	transcription start site region 35576	1243 bp downstream
Tssr35577	transcription start site region 35577	1306 bp downstream
Tssr35578	transcription start site region 35578	1333 bp downstream
Tssr35579	transcription start site region 35579	1352 bp downstream