rs46061361 SNP Detail

Summary

• ID
  rs46061361
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44054231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTTCCAT TCATTATGAA
  GGGACAGACC TGGGGCTTCC AAAACTATAG GTGTTTTCAG AGAGGGACAG GCTCCCAGAA
  GTCTGCCCTT ACCTCTAGAG TATCCATAGC TGGCAGCATG CTACTAAATG CTAGCTAGCG
  TCTCTGCCCC CTCCTGTGTG CCCTATTCAC CTGCATCACT GCGATCGGTC CCAAAGCTAC
  S
  CTGTGTAATT CCCCCTAACC CCAAGTGAAC CAGAACTCAA GTGTGCTACA ACAAAAGAAA
  TTTTATTTAA AAATACTTTT TTTTTACAGA CACGGGTGCT TGAAAAAGCT CTTTAGTTAA
  CTGTATGGAA ATGAAAAAAA TTAATAAATA ACATTAGTAT AACAGACCTC TAATTAGTAT
  AACAGACCTC TACATATCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136391616	ENSMUSSNP5401926	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46061361					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44054231 () rs orientation: forward

Symbol	Name	Function Class
Cbl	Casitas B-lineage lymphoma	42 bp downstream
Mcam	melanoma cell adhesion molecule	207 bp downstream
Rr383290	regulatory region 383290	1581 bp downstream
Rr677565	regulatory region 677565	1187 bp proximal
Rr677566	regulatory region 677566	1514 bp proximal
Rr677567	regulatory region 677567	1607 bp proximal
Tssr89112	transcription start site region 89112	1593 bp downstream
Tssr89113	transcription start site region 89113	1779 bp downstream