rs46062538 SNP Detail

Summary

• ID
  rs46062538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41183906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTTGCTG ACATACACGA
  GGGAGCGTCA AGGCTGGGTA GACAGGTCAG CGTCTAGGTC TCTGGGACCC ACCCTTCTTC
  ATGTATCCTG CCTGAATATT TGGAGAGCAA TTGCTGGGAC ACACTGAGGT GGCCTGCTGA
  CAGGGTTTTG AACGTGATTC AGGGGCAAGA CTGTTATGGA TAACTAGTGT CCCATGGCAG
  R
  CCACAGCACC TAGGACCTAG GGCCAACTCA GGGACTTCCT ATGTCCACCT TATCCATTAC
  AGAGGCTAGG ACTCTGTGTC CATCATTGTG GGATCCCACT TGACTTGGCT TTGACCCAGC
  ATCTTCTCAT TGGCTCATTT CTTCAGCCTT GTGACCTCAA CAATCTGTCC TCAGTCCAGG
  AACACGGCCA CATGGTTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ
ss60399177	NES15898928	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ
rs46062538					SNP	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60399177	NES15898928	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41183906 () rs orientation: forward

Symbol	Name	Function Class
Gm64942	predicted gene, 64942	within coordinates
Rr575921	regulatory region 575921	526 bp distal
Rr575922	regulatory region 575922	804 bp distal