rs46062635 SNP Detail

Summary

• ID
  rs46062635
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134656276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GTAGCAGTGA ATCAGTCTAT TTCATATAGC CTTGGATGTC
  CAGGCTTGCC TCTAACCCCT CAGGTTCTGG GATTAAGGGT GTGGGGCACC ATACTTGGAA
  W
  TTTTTTTTTT TTTTTTTTTG ATTTTCGAGT CAGGGTTTCT CTGTGTAGCC CTGGCTGTCC
  TGGAACCCAC TCTGTAGACC AGGCTGGCCT TGAACTCAGA A                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147538915	ENSMUSSNP329800	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46062635					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134656276 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15054	CpG island 15054	1708 bp proximal
Rr367744	regulatory region 367744	1069 bp upstream
Rr601870	regulatory region 601870	25 bp distal
Rr601871	regulatory region 601871	252 bp proximal
Rr601872	regulatory region 601872	1443 bp proximal
Rsrp1	arginine/serine rich protein 1	1595 bp downstream
Tssr39596	transcription start site region 39596	1934 bp upstream
Tssr39597	transcription start site region 39597	1953 bp upstream
Tssr39598	transcription start site region 39598	1981 bp upstream
Tssr43947	transcription start site region 43947	1594 bp upstream