rs46062776 SNP Detail

Summary

• ID
  rs46062776
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21634344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTGGGTCCTA CCCCCCAAAC CAAGTAATGT TTCTTCTTTC
  TAATTAATTA ATTAGTACAG GGGAGTGTGT GTGGAAGTTA GAGGACAATT TGCTGGAGTT
  R
  GTTCTGGTTC TCTCTCCTTC CAGTATGTGG ATCCCTGGGA TCAAACTCAG GTCTTCAGGC
  TTGCACCCTC ACCCACTGAG CCAACTCGCT CACCCGCACA C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss136225830	ENSMUSSNP6284637	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46062776					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21634344 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21450	CpG island 21450	91 bp proximal
Gm26511	predicted gene, 26511	within coordinates
Ldlr	low density lipoprotein receptor	528 bp upstream
Rr206061	regulatory region 206061	within coordinates
Rr401274	regulatory region 401274	327 bp upstream
Rr401275	regulatory region 401275	1145 bp upstream
Tssr84044	transcription start site region 84044	556 bp upstream
Tssr84045	transcription start site region 84045	576 bp upstream