rs46062904 SNP Detail

Summary

• ID
  rs46062904
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152917491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTAGCTG GGGAGAGGTG
  GTGCATACCT TTAATCCTAG CACTTGGGAG ACAGAGGCAG GCAGATTTCT GAGTTTGAGT
  CCAGCCTAGT CTACAGTGTG AGTTCCAGGA CAGCCAGGGC TAAATAGTGA GACCCTGTCT
  CAAAAATCAA ACCAAAACAA AGACATAAGT AAGATTATAC CACTTGCTTT TTCTTTATTA
  Y
  TTAACAACTT CACACACACA CACACACACA CACACACGCT ACCTCCCAGA GACCATCCAA
  CATAAACGGT GCCTGTTGAT CCAGCCAATG TTCTAGAACT GAGCTCTAGA GCCTTAGCGT
  CTTGGTTTAT TGCACTCTCT GCACATGAGA AGCACAACCT CCAAGCCTCC AGCTCCTGGA
  TCCTCTCCTT CATTCACATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145736649	ENSMUSSNP2362907	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46062904					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152917491 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nmnat2	nicotinamide nucleotide adenylyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420581	regulatory region 420581			930 bp distal
Rr420582	regulatory region 420582			1367 bp distal
Rr420583	regulatory region 420583			1188 bp distal