rs46064648 SNP Detail

Summary

• ID
  rs46064648
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164174959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGT AGCAAATCGT TGAGGGCTGA
  T
  GGGGAATGTT AGCATCTGTA TCAGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148223083	ENSMUSSNP659450	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320605470	CHEV_2_164158775	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46064648					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164174959 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	290 bp upstream
Tssr745	transcription start site region 745	333 bp upstream
Tssr746	transcription start site region 746	344 bp upstream
Tssr747	transcription start site region 747	357 bp downstream
Tssr748	transcription start site region 748	378 bp upstream
Tssr749	transcription start site region 749	410 bp upstream
Tssr750	transcription start site region 750	423 bp upstream
Tssr751	transcription start site region 751	477 bp upstream
Tssr752	transcription start site region 752	546 bp upstream
Tssr753	transcription start site region 753	553 bp upstream
Tssr754	transcription start site region 754	1225 bp upstream
Tssr21562	transcription start site region 21562	303 bp downstream
Tssr21563	transcription start site region 21563	294 bp downstream
Tssr21564	transcription start site region 21564	263 bp downstream
Tssr21565	transcription start site region 21565	250 bp downstream
Tssr21566	transcription start site region 21566	239 bp downstream
Tssr21567	transcription start site region 21567	227 bp downstream
Tssr21568	transcription start site region 21568	218 bp downstream
Tssr21569	transcription start site region 21569	256 bp upstream
Tssr21570	transcription start site region 21570	318 bp upstream
Tssr21571	transcription start site region 21571	349 bp upstream
Tssr21572	transcription start site region 21572	366 bp upstream
Tssr21573	transcription start site region 21573	395 bp upstream
Tssr21574	transcription start site region 21574	459 bp upstream
Tssr21575	transcription start site region 21575	1237 bp upstream
Tssr21576	transcription start site region 21576	1253 bp upstream
Tssr21577	transcription start site region 21577	1272 bp upstream
Tssr27433	transcription start site region 27433	314 bp downstream
Tssr27434	transcription start site region 27434	337 bp downstream
Tssr27435	transcription start site region 27435	365 bp downstream
Tssr27436	transcription start site region 27436	384 bp downstream
Tssr27437	transcription start site region 27437	405 bp downstream
Tssr27438	transcription start site region 27438	435 bp downstream
Tssr27439	transcription start site region 27439	449 bp downstream
Tssr27440	transcription start site region 27440	459 bp downstream
Tssr27441	transcription start site region 27441	514 bp downstream
Tssr27442	transcription start site region 27442	522 bp downstream
Tssr27443	transcription start site region 27443	585 bp downstream
Tssr27444	transcription start site region 27444	594 bp downstream
Tssr27445	transcription start site region 27445	1210 bp downstream
Tssr27446	transcription start site region 27446	1254 bp downstream
Tssr27447	transcription start site region 27447	1349 bp downstream
Tssr27448	transcription start site region 27448	1963 bp downstream