rs46064910 SNP Detail

Summary

• ID
  rs46064910
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:8474907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G ATCGTGGTGG TGGTGGTGCA TTAATTTCTG GAAATACGAG
  AGGGCTGCTG GACTTGCCTC TTTTTTTTTT TTTTTTTTTT TTTTTTTTCC TTTTTGGCGG
  K
  GGTTTTGATT GCCTCCCTGG TAGTCGGGAT AAGGCCTGTA GGCGACGCTG TGCAAGCAAG
  GAGCCGGTCG CTCTGGCGCT GCGATCTAGG TGTGGGTGGA G                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147049434	ENSMUSSNP5995386	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46064910					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:8474907 () rs orientation: forward

Symbol	Name	Function Class
AW557046	expressed sequence AW557046	within coordinates
Cpgi6933	CpG island 6933	within coordinates
Cpgi6934	CpG island 6934	558 bp proximal
Gm63261	predicted gene, 63261	within coordinates
Nipbl	NIPBL cohesin loading factor	960 bp upstream
Rr369900	regulatory region 369900	within coordinates
Tssr4546	transcription start site region 4546	546 bp upstream
Tssr130591	transcription start site region 130591	1787 bp downstream
Tssr130592	transcription start site region 130592	674 bp downstream
Tssr130593	transcription start site region 130593	450 bp downstream
Tssr130594	transcription start site region 130594	3 bp downstream
Tssr130595	transcription start site region 130595	142 bp upstream
Tssr130596	transcription start site region 130596	765 bp upstream
Tssr133664	transcription start site region 133664	1214 bp upstream
Tssr133665	transcription start site region 133665	1177 bp upstream
Tssr133666	transcription start site region 133666	975 bp upstream
Tssr133667	transcription start site region 133667	917 bp upstream
Tssr133668	transcription start site region 133668	755 bp upstream