rs46066021 SNP Detail

Summary

• ID
  rs46066021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191709875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTGGACCC AGGACCCAGG CGGCCATGGG AGGCCCCTCA
  ATCCTCACTG GTCAAAGATG AGCAGACTCG GGCCTGATCC TGAGGGTGCA CAACCTGGTT
  Y
  GTAAACTTAG AGGAAGCCAC ATCTGTTGTC TACTTTGGGC AGAGCAAGCT TCTGAGAGAA
  ACCAGCCTTA ACGTTCCCCC TTGTGCTGTG CAGGGGACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60361407	NES15865155	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	C	T	C		C	T	T	C		T
ss320196681	CHEV_1_193801795	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46066021					SNP	C	T	T	T	T	T	T	C	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60361407	NES15865155	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191709875 () rs orientation: forward

Symbol	Name	Function Class
Gm70525	predicted gene, 70525	1573 bp downstream
Gm70534	predicted gene, 70534	within coordinates
Rd3	retinal degeneration 3	Intron
Rr426276	regulatory region 426276	531 bp distal
Rr426277	regulatory region 426277	349 bp distal
Rr426278	regulatory region 426278	1373 bp proximal
Tssr10797	transcription start site region 10797	525 bp downstream
Tssr10798	transcription start site region 10798	514 bp downstream
Tssr10799	transcription start site region 10799	469 bp downstream
Tssr10800	transcription start site region 10800	333 bp upstream
Tssr10801	transcription start site region 10801	370 bp upstream