rs46067071 SNP Detail

Summary

• ID
  rs46067071
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165065952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCTTACTA TATGAAGTCT TCCTTTGAAT TTTTCTGCAT
  TAGGCCAAGA AAAAAATGTA TAGAATCTCT GTGATTTTTG AAAACAGCCT AGTCTACATA
  R
  CAAATTCCAG GCCTATGTAT TCCTTGTTTC AATAAACAAA CAAATGTGCC TCTTGTTCTT
  TCAGCATAGG TCATGGCTGA GGCTGAGTTT AGTTTCAAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145997579	ENSMUSSNP4549126	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46067071					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165065952 () rs orientation: forward

Symbol	Name	Function Class
Cpgi949	CpG island 949	974 bp distal
Rr372385	regulatory region 372385	385 bp downstream
Rr422343	regulatory region 422343	1451 bp distal
Rr422344	regulatory region 422344	1841 bp distal
Rr422345	regulatory region 422345	950 bp distal
Rr422346	regulatory region 422346	1423 bp distal
Tiprl	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	1387 bp upstream
Tssr9804	transcription start site region 9804	1876 bp downstream
Tssr14765	transcription start site region 14765	1427 bp upstream
Tssr14766	transcription start site region 14766	1392 bp upstream